STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_1513Conserved hypothetical protein. (167 aa)    
Predicted Functional Partners:
MCP_1516
Archaeosine tRNA-ribosyltransferase.
 
     0.828
MCP_1515
Belongs to the Conserved hypothetical protein 1210 family (IPR005909).
 
     0.754
MCP_2786
Conserved hypothetical protein; Belongs to the Protein of unknown function DUF509 family (IPR007510).
  
     0.628
MCP_2849
Putative single-stranded DNA-binding replication protein.
  
     0.626
MCP_1751
Conserved hypothetical protein; Similar to JAMM-like protein in Archaeoglobus fulgidus (O28085, AF_2198).
  
     0.620
MCP_2599
Conserved hypothetical protein.
  
     0.619
MCP_0724
Putative DNA-directed RNA polymerase subunit F.
  
     0.618
MCP_1514
Nitroreductase.
       0.613
ribK
Conserved hypothetical protein; Catalyzes the CTP-dependent phosphorylation of riboflavin (vitamin B2) to form flavin mononucleotide (FMN); Belongs to the archaeal riboflavin kinase family.
  
   
 0.591
MCP_2870
Putative HTH-type transcriptional regulator.
  
     0.590
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.