Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
MCP_1516Archaeosine tRNA-ribosyltransferase. (596 aa)    
Predicted Functional Partners:
MCP_1515
Belongs to the Conserved hypothetical protein 1210 family (IPR005909).
 
     0.960
MCP_0292
Conserved hypothetical protein.
 
   
 0.871
MCP_1513
Conserved hypothetical protein.
 
     0.828
MCP_1514
Nitroreductase.
       0.754
MCP_2999
Putative signal sequence peptidase.
 
    0.693
MCP_0206
Conserved hypothetical protein; Belongs to the NMD3 family (IPR007064).
  
    0.692
MCP_0003
Conserved hypothetical protein.
 
    0.690
MCP_0048
Conserved hypothetical protein.
 
    0.690
MCP_2849
Putative single-stranded DNA-binding replication protein.
  
     0.674
MCP_2870
Putative HTH-type transcriptional regulator.
  
     0.673
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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