STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_1527Putative AAA ATPase. (329 aa)    
Predicted Functional Partners:
MCP_1526
Conserved hypothetical protein; Contains one Protein of unknown function DUF58 domain (IPR002881).
 
  
 0.870
MCP_1528
Hypothetical protein.
       0.803
MCP_1529
Hypothetical protein.
       0.773
MCP_0872
Contains one Protein of unknown function DUF58 domain (IPR002881).
 
  
 0.689
MCP_1525
Hypothetical protein.
       0.651
pyk
Pyruvate kinase; Belongs to the pyruvate kinase family.
     
 0.587
MCP_1530
Putative nucleotide sugar epimerase/dehydratase.
       0.516
MCP_1531
Putative serine/threonine kinase.
       0.516
MCP_1532
Conserved hypothetical protein; Contains one KH domain (IPR004087); Contains one KH, type 1 domain (IPR004088).
       0.516
MCP_2676
Conserved hypothetical protein; Belongs to the GHMP kinase-like, archaeal family (IPR012043).
   
    0.453
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.