STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_1530Putative nucleotide sugar epimerase/dehydratase. (312 aa)    
Predicted Functional Partners:
MCP_0949
Hypothetical protein; Contains one UDP-glucose/GDP-mannose dehydrogenase domain (IPR001732); Contains one Glycosyl transferase, family 2 domain (IPR001173).
 
 0.974
ugd
UDP-glucose 6-dehydrogenase.
 0.942
MCP_0802
Sugar-1-phosphate nucleotidylyltransferase.
 
 0.936
MCP_0805
Putative sugar-1-phosphate nucleotidylyltransferase.
 
 0.934
MCP_0171
Putative nucleotidyl transferase.
 
 
 0.928
MCP_0863
Putative nucleotide sugar epimerase/dehydratase.
 
  
 
0.918
MCP_0103
Mannose-1-phosphate guanyltransferase.
 
 0.892
rfbA
Glucose-1-phosphate thymidylyltransferase.
 
 
 0.883
MCP_2721
Putative nucleotidyl transferase.
  
 0.863
rps28e
30S ribosomal protein S28e; Belongs to the eukaryotic ribosomal protein eS28 family.
  
 0.858
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
Server load: medium (54%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.