STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_1562Putative peptide ABC transporter permease protein. (304 aa)    
Predicted Functional Partners:
MCP_1561
Putative peptide ABC transporter ATP binding protein.
  
 0.999
MCP_1563
Putative peptide ABC transporter permease protein.
 
 0.999
MCP_1560
Putative peptide ABC transporter ATP binding protein.
 
 0.997
MCP_1564
Putative peptide ABC transporter peptide binding protein.
 0.996
MCP_1823
ABC transporter substrate binding protein.
 
 0.989
MCP_2744
Putative amino acid ABC transporter ATP binding protein.
    
 0.928
atw-2
Putative methylcoenzyme M reductase system component A2.
  
 0.916
atw-1
Putative methylcoenzyme M reductase system component A2.
  
 0.912
MCP_1305
ABC transporter ATP binding protein.
  
 0.901
MCP_2986
ABC transporter ATP binding protein.
 
  
 0.901
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.