STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fdhB-1Formate dehydrogenase beta chain. (413 aa)    
Predicted Functional Partners:
fdhA-1
Formate dehydrogenase alpha chain.
 
 0.995
hdrA-1
CoB--CoM heterodisulfide reductase iron-sulfur subunit A; Part of a complex that catalyzes the reversible reduction of CoM-S-S-CoB to the thiol-coenzymes H-S-CoM (coenzyme M) and H-S-CoB (coenzyme B).
 
 0.995
hdrC-1
CoB--CoM heterodisulfide reductase iron-sulfur subunit C.
 
 0.993
hdrB-1
CoB--CoM heterodisulfide reductase subunit B.
 
 0.990
mvhD-2
F420-non-reducing hydrogenase iron-sulfur subunit D.
 0.989
hdrA-2
CoB--CoM heterodisulfide reductase iron-sulfur subunit A; Part of a complex that catalyzes the reversible reduction of CoM-S-S-CoB to the thiol-coenzymes H-S-CoM (coenzyme M) and H-S-CoB (coenzyme B).
 
 0.989
hdrC-3
CoB--CoM heterodisulfide reductase iron-sulfur subunit C.
 
 0.984
fdhA-2
Formate dehydrogenase alpha chain.
  
 0.979
fwdD-1
Tungsten-containing formylmethanofuran dehydrogenase subunit D.
 
 
 0.978
fwdF-1
Tungsten-containing formylmethanofuran dehydrogenase subunit F.
 
 
 0.977
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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