Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
fdhA-1Formate dehydrogenase alpha chain. (686 aa)    
Predicted Functional Partners:
fdhB-1
Formate dehydrogenase beta chain.
 
 0.993
fdhB-2
Formate dehydrogenase beta chain.
 
 0.973
fwdB-1
Tungsten-containing formylmethanofuran dehydrogenase subunit B.
 
 
0.962
fwdA-1
Tungsten-containing formylmethanofuran dehydrogenase subunit A.
  
 0.957
MCP_0989
Glutamate synthase.
    
 0.954
fwdD-1
Tungsten-containing formylmethanofuran dehydrogenase subunit D.
   
  0.945
fwdG-1
Tungsten-containing formylmethanofuran dehydrogenase subunit G.
 
 
  0.940
MCP_2644
4Fe-4S ferredoxin, iron-sulfur binding protein.
 
 
 0.921
MCP_2598
NADH oxidase.
    
 0.919
fwdC-1
Tungsten-containing formylmethanofuran dehydrogenase subunit C.
  
 
 0.905
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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