Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
MCP_1601Hypothetical protein; Belongs to Type I phosphodiesterase/nucleotide pyrophosphatase family (IPR002591). (458 aa)    
Predicted Functional Partners:
MCP_1602
Hypothetical protein; Contains one DEAD/DEAH box helicase, N-terminal domain (IPR011545); Contains one Helicase, C-terminal domain (IPR001650).
       0.768
MCP_1603
Hypothetical protein.
       0.768
MCP_0965
Hypothetical protein; Contains one DNA methylase N-4/N-6 domain (IPR002941); Contains one N-6 Adenine-specific DNA methylase domain (IPR002052).
       0.582
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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