STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_1602Hypothetical protein; Contains one DEAD/DEAH box helicase, N-terminal domain (IPR011545); Contains one Helicase, C-terminal domain (IPR001650). (1430 aa)    
Predicted Functional Partners:
MCP_1603
Hypothetical protein.
       0.773
MCP_1601
Hypothetical protein; Belongs to Type I phosphodiesterase/nucleotide pyrophosphatase family (IPR002591).
       0.768
MCP_2668
Putative Na(+)/H(+) antiporter.
  
    0.696
MCP_0816
Conserved hypothetical protein.
 
    0.621
MCP_2279
Putative ATP-dependent helicase.
 
 
 
 0.478
MCP_1434
Putative family B DNA polymerase.
  
 
   0.435
rpoA1
DNA-directed RNA polymerase subunit A; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.400
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.