STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_1625Hypothetical protein; Contains four Regulator of chromosome condensation, RCC1 repeats (IPR000408). (427 aa)    
Predicted Functional Partners:
MCP_2698
Protein kinase; Contains at least one Tetratricopeptide region domain (IPR013026); Contains at least three Tetratricopeptide TPR_1 repeats (IPR001440).; Contains at least five Tetratricopeptide TPR_2repeats (IPR013105).
  
 
 0.810
MCP_0187
Peptidyl-prolyl cis-trans isomerase.
   
 0.758
MCP_2639
Putative hydrogenase membrane component.
   
 
 0.739
MCP_0233
Similar to peptide synthetase AdpD in Anabaena circinalis 90 (Q9K5L9).
 
 
 0.703
MCP_2059
Putative ATP-dependent RNA helicase; Belongs to the DEAD box helicase family.
 
 
 
 0.689
MCP_0232
Putative acyl-CoA synthetase.
 
 
 
 0.652
rpl40e
50S ribosomal protein L40e; Belongs to the eukaryotic ribosomal protein eL40 family.
    
 0.649
MCP_0403
Peptidase S8 family protein; Belongs to the peptidase S8 family.
  
 
 0.640
MCP_1103
Hypothetical protein.
  
 
 0.640
MCP_1283
Putative subtilisin; Belongs to the peptidase S8 family.
  
 
 0.640
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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