STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_1635Putative ABC transporter. (243 aa)    
Predicted Functional Partners:
MCP_1634
Putative ABC transporter.
  
  0.999
MCP_1633
ABC transporter ATP binding protein.
 
  
  0.986
MCP_1632
Putative ABC transporter.
 
     0.599
MCP_1631
ABC transporter ATP binding protein.
 
     0.576
MCP_2894
Putative MarR family transcriptional regulator.
  
     0.477
MCP_2892
Conserved hypothetical protein.
  
     0.451
MCP_1630
Putative TetR family transcriptional regulator.
 
     0.446
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.