STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_1649Conserved hypothetical protein; Belongs to the Predicted nickel metalloenzyme maturation factor, AIR synthase-related family (IPR009186). (457 aa)    
Predicted Functional Partners:
sepS
O-phosphoseryl-tRNA synthetase; Catalyzes the attachment of O-phosphoserine (Sep) to tRNA(Cys).
  
     0.624
MCP_1324
Conserved hypothetical protein; Contains one ATP-grasp fold, DUF201-type domain (IPR003806).
  
     0.615
MCP_1648
Conserved hypothetical protein; Belongs to the Protein of unknown function UPF0179 family (IPR005369).
       0.561
MCP_2322
Conserved hypothetical protein; Contains one RNA binding S1 domain (IPR003029); Contains one RNucleic acid binding, OB-fold, tRNA/helicase-type domain (IPR004365).; Contains one Phosphoesterase, RecJ-like (IPR001667).
  
     0.560
fwdD-1
Tungsten-containing formylmethanofuran dehydrogenase subunit D.
  
     0.545
fwdD-2
Tungsten-containing formylmethanofuran dehydrogenase subunit D.
  
     0.545
MCP_0066
Putative transcriptional regulator.
  
     0.538
MCP_0275
Putative glucose-6-phosphate isomerase.
  
     0.527
MCP_1650
Putative response regulator.
       0.512
mtrH
Tetrahydromethanopterin S-methyltransferase subunit H.
  
     0.501
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.