STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_1675Putative arsenical pump membrane protein. (428 aa)    
Predicted Functional Partners:
pheA
Prephenate dehydratase.
     
 0.777
MCP_1491
Amino acid transporter.
     
 0.629
MCP_1966
Amino acid transporter; Contains two UspA domains (IPR006016).
     
 0.629
MCP_1673
PadR-like family transcriptional regulator.
       0.615
MCP_1676
Conserved hypothetical protein.
       0.613
MCP_0064
Putative ATP-dependent helicase.
       0.537
MCP_2903
Putative NADPH:quinone oxidoreductase.
  
  
 0.485
MCP_1672
Conserved hypothetical protein.
     
 0.453
MCP_1447
Conserved hypothetical protein.
       0.451
MCP_0108
Phosphate transporter.
  
  
 0.435
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.