STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_1678Conserved hypothetical protein. (555 aa)    
Predicted Functional Partners:
MCP_0989
Glutamate synthase.
  
 
 0.985
MCP_0793
Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
  
 
 0.928
MCP_0710
Glutamate synthase large subunit domain 1.
  
 
 0.866
MCP_2438
Asparagine synthase.
  
  
 0.691
fwdC-1
Tungsten-containing formylmethanofuran dehydrogenase subunit C.
  
 
 0.686
fwdC-2
Tungsten-containing formylmethanofuran dehydrogenase subunit C.
  
 
 0.686
rpl14p
50S ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.
   
 
 0.640
tfb
Transcription initiation factor IIB; Stabilizes TBP binding to an archaeal box-A promoter. Also responsible for recruiting RNA polymerase II to the pre-initiation complex (DNA-TBP-TFIIB).
    
   0.543
MCP_1677
Putative signaling protein; Contains two PAS domains (IPR000014); Contains one PAS-associated, C-terminal domain (IPR000700).; Contains one PAC motif repeat (IPR001610).
  
  
 0.521
MCP_1679
Hypothetical protein.
       0.502
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.