STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_1758ABC transporter substrate binding protein. (336 aa)    
Predicted Functional Partners:
MCP_2522
ABC transporter permease protein.
 
 
 0.958
MCP_2523
ABC transporter ATP binding protein.
 
 
 0.954
MCP_1757
Putative histidine kinase; Contains one ATP-binding region, ATPase-like domain (IPR003594); Contains one Histidine kinase, HAMP region domain (IPR003660).
       0.762
MCP_0431
Putative nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
   
 
 0.620
MCP_0586
Putative nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
   
 
 0.620
MCP_0588
Putative nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
   
 
 0.620
MCP_0401
Putative ABC transporter.
  
     0.494
comD/comE
Sulfopyruvate decarboxylase.
  
    0.494
mer
5,10-methylenetetrahydromethanopterin reductase; Catalyzes the reversible reduction of methylene-H(4)MPT to methyl-H(4)MPT; Belongs to the mer family.
 
  
 0.480
MCP_1759
Conserved hypothetical protein; Belongs to the Protein of unknown function DUF790, endonuclease-like family (IPR008508).
       0.470
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.