STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_1759Conserved hypothetical protein; Belongs to the Protein of unknown function DUF790, endonuclease-like family (IPR008508). (516 aa)    
Predicted Functional Partners:
MCP_1760
DNA repair helicase.
 
 
 
 0.996
MCP_1822
Putative purine phosphoribosyltransferase.
  
     0.528
MCP_1761
Hypothetical protein.
       0.525
MCP_1958
Conserved hypothetical protein; Contains one Protein of unknown function DUF102 domain (IPR002805); Belongs to the UPF0284 family.
  
     0.496
MCP_1758
ABC transporter substrate binding protein.
       0.470
MCP_1757
Putative histidine kinase; Contains one ATP-binding region, ATPase-like domain (IPR003594); Contains one Histidine kinase, HAMP region domain (IPR003660).
       0.464
MCP_0492
Putative transcriptional regulator; Contains an extra Cystathionine-beta-synthase domain (IPR000644) in the C-terminal region.
  
     0.438
MCP_1762
Conserved hypothetical protein.
       0.436
MCP_1946
Conserved hypothetical protein; Belongs to the Protein of unknown function DUF99 family (IPR002802).
  
     0.427
MCP_0137
Conserved hypothetical protein; Belongs to the Protein of unknown function DUF460 family (IPR007408).
  
     0.417
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.