Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
MCP_1765ABC transporter ATP binding protein. (238 aa)    
Predicted Functional Partners:
MCP_1300
ABC transporter ATP binding protein.
 
    
0.909
MCP_1766
Conserved hypothetical protein.
       0.888
MCP_1767
Conserved hypothetical protein; Belongs to the Protein of unknown function UPF0047 family (IPR001602).
       0.773
MCP_1764
Conserved hypothetical protein.
 
     0.655
MCP_1195
ABC transporter permease protein.
  
 0.526
MCP_0255
ABC transporter permease protein.
  
 0.502
MCP_1769
Conserved hypothetical protein; Contains at least one Tetratricopeptide region domain (IPR013026); Contains five Tetratricopeptide TPR_1 repeats (IPR001440).
 
   
 0.444
MCP_0985
Putative ABC transporter.
 
 
 0.438
MCP_0992
Putative ABC transporter.
 
 
 0.427
MCP_1768
Putative signaling protein; Contains two PAS domains (IPR000014); Contains two PAS-associated, C-terminal domains (IPR000700).
       0.427
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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