STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_1789Putative iron compound ABC transporter ATP binding protein. (255 aa)    
Predicted Functional Partners:
MCP_1790
Putative iron compound ABC transporter permease protein.
 
 0.992
MCP_1095
Putative iron compound ABC transporter permease protein.
 
 0.947
MCP_1076
Putative iron compound ABC transporter permease protein.
 
 0.945
MCP_1791
Putative iron compound ABC transporter iron compound binding protein.
 
 
 0.939
MCP_2917
Putative iron compound ABC transporter iron compound binding protein.
 
 
 0.843
MCP_1077
Putative iron compound ABC transporter iron compound binding protein.
 
 
 0.820
MCP_2984
Putative ABC transporter; Contains one Protein of unknown function DUF214, permase predicted domain (IPR003838).
 
  
 0.768
MCP_0380
Putative cobalt ABC transporter ATP binding protein.
   
0.742
MCP_2983
Putative ABC transporter; Contains one Protein of unknown function DUF214, permase predicted domain (IPR003838).
  
 0.711
MCP_1562
Putative peptide ABC transporter permease protein.
    
 0.623
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.