STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_1793Putative AAA ATPase. (442 aa)    
Predicted Functional Partners:
MCP_1794
Conserved hypothetical protein; Contains one von Willebrand factor, type A domain (IPR002035).
     0.943
MCP_1795
Conserved hypothetical protein; Belongs to the UPF0305 family.
       0.610
MCP_1792
Conserved hypothetical protein.
       0.458
MCP_0358
Peptidase M48, Ste24p family protein.
 
  
 0.446
MCP_1249
Conserved hypothetical protein.
  
     0.440
MCP_0872
Contains one Protein of unknown function DUF58 domain (IPR002881).
 
  
 0.437
MCP_2180
Conserved hypothetical protein.
 
     0.416
MCP_2676
Conserved hypothetical protein; Belongs to the GHMP kinase-like, archaeal family (IPR012043).
   
    0.404
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.