STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_1805Putative cation transporter; Contains one Cystathionine-beta-synthase domain (IPR000644). (454 aa)    
Predicted Functional Partners:
MCP_1804
Putative cation transporter.
  
 0.953
MCP_1806
Conserved hypothetical protein; Contains one Zinc finger, SWIM-type domain (IPR007527).
       0.631
MCP_1803
Putative cation efflux protein.
     
 0.587
MCP_1802
Putative universal stress protein.
       0.586
MCP_1807
Conserved hypothetical protein.
       0.490
MCP_1079
ABC transporter permease protein.
   
 
 0.450
MCP_1808
Conserved hypothetical protein; Contains one Radical SAM domain (IPR007197); Similar to Pyruvate formate lyase activating protein homologue in Thermococcus litoralis (Q56302).
       0.404
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.