STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_1825Hypothetical protein; Contains two Na-Ca exchanger/integrin-beta4 domains (IPR003644). (720 aa)    
Predicted Functional Partners:
MCP_1823
ABC transporter substrate binding protein.
       0.639
MCP_0325
Hypothetical protein; Contains at least one Bacterial Ig-like, group 1 domain (IPR003344); Contains at least one Cna B-type domain (IPR008454).
 
     0.634
MCP_1824
Hypothetical protein.
      
0.623
MCP_1827
Conserved hypothetical protein; Belongs to the Protein of unknown function DUF125, transmembrane family (IPR008217).
       0.545
MCP_1826
Conserved hypothetical protein; Belongs to the Protein of unknown function DUF211 family (IPR003831).
       0.527
MCP_0572
Hypothetical protein; Contains at least one PT repeat (IPR006970).
  
     0.444
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.