STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Coexpression
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[Homology]
Score
MCP_1920Putative AsnC/Lrp family transcriptional regulator. (76 aa)    
Predicted Functional Partners:
MCP_0455
AsnC/Lrp family transcriptional regulator.
   
 
 0.607
MCP_0490
AsnC/Lrp family transcriptional regulator.
   
 
 0.607
MCP_0612
AsnC/Lrp family transcriptional regulator.
   
 
 0.607
MCP_1252
AsnC/Lrp family transcriptional regulator.
   
 
 0.607
MCP_1343
AsnC/Lrp family transcriptional regulator.
   
 
 0.607
MCP_2532
AsnC/Lrp family transcriptional regulator.
   
 
 0.607
MCP_2549
AsnC/Lrp family transcriptional regulator.
   
 
 0.607
MCP_2550
AsnC/Lrp family transcriptional regulator.
   
 
 0.607
srp54
Signal recognition 54 kDa protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily.
  
    0.543
tiaS
Conserved hypothetical protein; ATP-dependent agmatine transferase that catalyzes the formation of 2-agmatinylcytidine (agm2C) at the wobble position (C34) of tRNA(Ile2), converting the codon specificity from AUG to AUA.
       0.466
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.