STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_1930Putative glycosyltransferase. (299 aa)    
Predicted Functional Partners:
MCP_1931
Putative glycosyltransferase.
  
 0.929
MCP_0235
Conserved hypothetical protein.
 
  
 0.886
MCP_0236
Conserved hypothetical protein.
 
  
 0.819
MCP_1932
Putative glycosyltransferase.
  
 0.766
MCP_1933
Conserved hypothetical protein.
      0.692
MCP_1936
ABC transporter permease protein.
  
  
 0.674
MCP_1935
ABC transporter ATP binding protein.
  
  
 0.605
MCP_1934
Conserved hypothetical protein; Belongs to the Protein of unknown function DUF268, Caenorhabditis species family (IPR004951).
       0.583
MCP_2071
Putative dTDP-4-dehydrorhamnose reductase.
 
  
 0.570
rfbD
dTDP-4-dehydrorhamnose reductase.
 
  
 0.561
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.