Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MCP_1931Putative glycosyltransferase. (299 aa)    
Predicted Functional Partners:
MCP_1930
Putative glycosyltransferase.
  
 0.929
MCP_0247
Putative glycosyltransferase.
  
0.906
MCP_1933
Conserved hypothetical protein.
      0.865
MCP_0238
Putative glycosyltransferase.
  
0.836
MCP_1932
Putative glycosyltransferase.
 
    
0.730
MCP_1934
Conserved hypothetical protein; Belongs to the Protein of unknown function DUF268, Caenorhabditis species family (IPR004951).
 
 
 
 0.679
MCP_1936
ABC transporter permease protein.
 
  
 0.646
MCP_2709
Putative glycosyltransferase.
  
 0.640
MCP_0135
Putative glycosyltransferase.
  
     0.634
MCP_1935
ABC transporter ATP binding protein.
  
  
 0.618
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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