Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
MCP_1934Conserved hypothetical protein; Belongs to the Protein of unknown function DUF268, Caenorhabditis species family (IPR004951). (256 aa)    
Predicted Functional Partners:
MCP_1933
Conserved hypothetical protein.
 
     0.787
MCP_1932
Putative glycosyltransferase.
 
 
 
 0.757
MCP_1936
ABC transporter permease protein.
 
     0.756
MCP_1935
ABC transporter ATP binding protein.
 
     0.741
MCP_1931
Putative glycosyltransferase.
 
 
 
 0.679
rps5p
30S ribosomal protein S5P; With S4 and S12 plays an important role in translational accuracy.
    
 0.658
rps9p
30S ribosomal protein S9P; Belongs to the universal ribosomal protein uS9 family.
   
 0.608
MCP_2698
Protein kinase; Contains at least one Tetratricopeptide region domain (IPR013026); Contains at least three Tetratricopeptide TPR_1 repeats (IPR001440).; Contains at least five Tetratricopeptide TPR_2repeats (IPR013105).
   
 
 0.599
MCP_1930
Putative glycosyltransferase.
       0.581
rps15p
30S ribosomal protein S15P/S13e.
  
  0.560
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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