STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_1936ABC transporter permease protein. (290 aa)    
Predicted Functional Partners:
MCP_1935
ABC transporter ATP binding protein.
 
 0.997
MCP_0245
ABC transporter ATP binding protein.
 
 0.989
MCP_1012
ABC transporter ATP binding protein.
 
 0.989
MCP_1013
Putative ABC transporter permease protein.
  
  
 
0.917
MCP_0246
ABC transporter permease protein.
  
  
 
0.912
MCP_0244
Hypothetical protein; Contains one Methyltransferase type 11 domain (IPR013216); Contains two Glycosyl transferase, family 2 domains (IPR001173).
  
  
 0.780
MCP_1934
Conserved hypothetical protein; Belongs to the Protein of unknown function DUF268, Caenorhabditis species family (IPR004951).
 
     0.756
MCP_1930
Putative glycosyltransferase.
  
  
 0.661
MCP_1932
Putative glycosyltransferase.
  
  
 0.648
MCP_1931
Putative glycosyltransferase.
 
  
 0.646
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.