STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_1946Conserved hypothetical protein; Belongs to the Protein of unknown function DUF99 family (IPR002802). (194 aa)    
Predicted Functional Partners:
MCP_1947
Conserved hypothetical protein.
       0.773
MCP_1948
Putative universal stress protein.
       0.557
csl4
Putative 3'-5' exoribonuclease; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Helpful for the interaction of the exosome with A-poor RNAs.
 
     0.551
MCP_1826
Conserved hypothetical protein; Belongs to the Protein of unknown function DUF211 family (IPR003831).
  
     0.510
MCP_0351
Conserved hypothetical protein; Contains one Nucleotide binding protein, PINc domain (IPR006596).
  
     0.451
MCP_1760
DNA repair helicase.
  
     0.432
MCP_1759
Conserved hypothetical protein; Belongs to the Protein of unknown function DUF790, endonuclease-like family (IPR008508).
  
     0.427
MCP_0857
Sep-tRNA:Cys-tRNA synthase; Converts O-phospho-L-seryl-tRNA(Cys) (Sep-tRNA(Cys)) to L- cysteinyl-tRNA(Cys) (Cys-tRNA(Cys)); Belongs to the SepCysS family.
  
     0.419
MCP_0251
Truncated threonyl-tRNA synthetase.
  
     0.415
MCP_1827
Conserved hypothetical protein; Belongs to the Protein of unknown function DUF125, transmembrane family (IPR008217).
  
     0.408
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.