STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_1981Conserved hypothetical protein; Contains at least one Cystathionine-beta-synthasedomain (IPR000644); Contains one ParB-like nuclease domain (IPR003115). (279 aa)    
Predicted Functional Partners:
hisE
phosphoribosyl-ATP pyrophosphatase.
     
 0.801
MCP_1980
Conserved hypothetical protein; Contains one CRS1/YhbY domain (IPR001890).
 
  
 0.642
MCP_2304
Conserved hypothetical protein; Contains two CBS domains (IPR000644).
 
     0.543
rpl39e
50S ribosomal protein L39e; Belongs to the eukaryotic ribosomal protein eL39 family.
 
     0.487
MCP_1979
Magnesium-transporting P-type ATPase.
  
    0.483
MCP_0298
Conserved hypothetical protein; Contains two CBS domains (IPR000644).
 
     0.479
MCP_1944
Conserved hypothetical protein; Belongs to the Peptidase M50 family (IPR008915).
 
     0.458
MCP_0295
Conserved hypothetical protein; Contains at least two CBS domains (IPR000644).
 
     0.439
MCP_2898
Putative transcriptional regulator; Contains an extra Cystathionine-beta-synthase domain (IPR000644) in the C-terminal region.
  
     0.430
pcn
DNA polymerase sliding clamp; Sliding clamp subunit that acts as a moving platform for DNA processing. Responsible for tethering the catalytic subunit of DNA polymerase and other proteins to DNA during high-speed replication.
 
   
 0.425
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.