STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
comD/comESulfopyruvate decarboxylase. (374 aa)    
Predicted Functional Partners:
MCP_1992
Putative threonine synthase; Specifically catalyzes the beta-elimination of phosphate from L-phosphoserine and the beta-addition of sulfite to the dehydroalanine intermediate to produce L-cysteate.
 
   
 0.949
comB
Putative 2-phosphosulfolactate phosphatase.
      
 0.912
mcrC
Methyl-coenzyme M reductase operon protein C.
      
 0.861
mtrA-1
Tetrahydromethanopterin S-methyltransferase subunit A; Part of a complex that catalyzes the formation of methyl- coenzyme M and tetrahydromethanopterin from coenzyme M and methyl- tetrahydromethanopterin. This is an energy-conserving, sodium-ion translocating step; Belongs to the MtrA family.
      
 0.785
hypB
Putative hydrogenase nickel incorporation protein HypB.
     
 0.770
MCP_0794
Threonine synthase.
 
   
 0.684
mtrH
Tetrahydromethanopterin S-methyltransferase subunit H.
 
   
 0.665
MCP_0257
Putative TrmB family transcriptional regulator.
  
    0.658
MCP_0442
Putative TrmB family transcriptional regulator.
  
    0.658
MCP_1055
Putative TrmB family transcriptional regulator.
  
    0.658
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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