Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
MCP_2003UbiA prenyltransferase family protein. (307 aa)    
Predicted Functional Partners:
MCP_2430
UbiA prenyltransferase family protein.
  
  
 
0.916
MCP_0056
Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
    
 0.826
MCP_1672
Conserved hypothetical protein.
 
  
 0.726
hmgA-1
3-hydroxy-3-methylglutaryl-coenzyme A reductase; Belongs to the HMG-CoA reductase family.
   
 
 0.619
hmgA-2
3-hydroxy-3-methylglutaryl-coenzyme A reductase; Belongs to the HMG-CoA reductase family.
   
 
 0.619
MCP_2782
Putative (S)-2,3-Di-O-geranylgeranylglyceryl phosphate synthase.
    
 0.554
MCP_2004
Belongs to the Protein of unknown function DUF998 family (IPR009339).
       0.540
MCP_2005
Hypothetical protein.
  
    0.484
MCP_0447
Conserved hypothetical protein.
  
     0.466
MCP_2894
Putative MarR family transcriptional regulator.
 
     0.442
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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