STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_2015Conserved hypothetical protein; Contains at least one Tetratricopeptide TPR_1 repeat (IPR001440). (541 aa)    
Predicted Functional Partners:
MCP_0982
Conserved hypothetical protein.
 
 
 0.706
MCP_1774
Hypothetical protein; Contains at least one Ankyrin repeatrepeat (IPR002110); Contains at least one PBS lyase HEAT-like repeat (IPR004155).
 
 0.698
ruvB
Holliday junction ATP-dependent DNA helicase RuvB.
 
 0.692
MCP_1769
Conserved hypothetical protein; Contains at least one Tetratricopeptide region domain (IPR013026); Contains five Tetratricopeptide TPR_1 repeats (IPR001440).
  
     0.674
MCP_0933
Hypothetical protein; Contains at least one Ankyrin repeat (IPR002110).
 
 0.668
MCP_1127
Hypothetical protein; Contains at least five WD-40 repeat repeats (IPR001680).
 
 
 0.667
dnaK
Heat shock protein 70; Acts as a chaperone.
  
 0.660
MCP_1208
Hypothetical protein; Contains at least one WD-40 repeat (IPR001680).
 
 
 0.648
aqpM
Aquaporin.
 
 
 
 0.648
rpoH
DNA-directed RNA polymerase subunit H; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoH/eukaryotic RPB5 RNA polymerase subunit family.
  
 0.645
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.