STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_2040Conserved hypothetical protein. (104 aa)    
Predicted Functional Partners:
MCP_2039
Hypothetical protein.
       0.773
echC
Ech hydrogenase subunit C.
    
   0.716
MCP_2637
Putative [NiFe]-hydrogenase small subunit.
    
   0.716
MCP_2041
ABC transporter ATP binding protein.
       0.547
MCP_2042
Putative ABC transporter.
       0.547
infB
Probable translation initiation factor 2; Function in general translation initiation by promoting the binding of the formylmethionine-tRNA to ribosomes. Seems to function along with eIF-2.
   
   0.493
MCP_1079
ABC transporter permease protein.
  
  
 0.428
MCP_1078
ABC transporter substrate binding protein.
  
  
 0.423
MCP_1080
ABC transporter ATP binding protein.
  
  
 0.420
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.