STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_2069Peptidase S8 family protein; Belongs to the peptidase S8 family. (765 aa)    
Predicted Functional Partners:
MCP_0487
Conserved hypothetical protein; Contains at least two Regulator of chromosome condensation, RCC1 repeats (IPR000408).
 
 
 0.766
MCP_1625
Hypothetical protein; Contains four Regulator of chromosome condensation, RCC1 repeats (IPR000408).
 
 
 0.766
MCP_2552
TraB family protein.
   
   0.657
dnaK
Heat shock protein 70; Acts as a chaperone.
  
 
 0.622
MCP_2070
Hypothetical protein.
       0.519
MCP_0952
Hypothetical protein; Contains one Glycosyl transferase, family 2 domain (IPR001173); Contains one Phosphoglycerate mutase domain (IPR013078).
  
 
 0.459
MCP_1078
ABC transporter substrate binding protein.
 
  
 0.453
MCP_0233
Similar to peptide synthetase AdpD in Anabaena circinalis 90 (Q9K5L9).
  
 
 0.448
MCP_2698
Protein kinase; Contains at least one Tetratricopeptide region domain (IPR013026); Contains at least three Tetratricopeptide TPR_1 repeats (IPR001440).; Contains at least five Tetratricopeptide TPR_2repeats (IPR013105).
 
 
 0.446
MCP_0636
Thermosome; Belongs to the TCP-1 chaperonin family.
 
 
 0.417
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.