STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_2129Conserved hypothetical protein; Contains one Beta-lactamase-like domain (IPR001279). (314 aa)    
Predicted Functional Partners:
MCP_2128
Hypothetical protein.
       0.792
glyA
Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. Also exhibits THF-independent aldolase activity toward beta- hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.
      0.760
MCP_2125
Conserved hypothetical protein.
       0.636
MCP_2126
Putative ATP-dependent DNA ligase.
       0.636
MCP_2127
Conserved hypothetical protein.
       0.636
MCP_0097
Conserved hypothetical protein; Contains one CMP/dCMP deaminase, zinc-binding domain (IPR002125).
  
  
 0.430
ruvA
Holliday junction ATP-dependent DNA helicase RuvA.
 
   
 0.409
MCP_2130
KaiC homolog.
       0.404
MCP_2131
KaiB homolog.
     
 0.401
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.