Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
MCP_0177 | MCP_2130 | Conserved hypothetical protein. | KaiC homolog. | 0.512 |
MCP_0177 | MCP_2131 | Conserved hypothetical protein. | KaiB homolog. | 0.442 |
MCP_0177 | MCP_2133 | Conserved hypothetical protein. | KaiB homolog. | 0.466 |
MCP_2128 | MCP_2129 | Hypothetical protein. | Conserved hypothetical protein; Contains one Beta-lactamase-like domain (IPR001279). | 0.793 |
MCP_2128 | MCP_2130 | Hypothetical protein. | KaiC homolog. | 0.404 |
MCP_2129 | MCP_2128 | Conserved hypothetical protein; Contains one Beta-lactamase-like domain (IPR001279). | Hypothetical protein. | 0.793 |
MCP_2129 | MCP_2130 | Conserved hypothetical protein; Contains one Beta-lactamase-like domain (IPR001279). | KaiC homolog. | 0.404 |
MCP_2129 | MCP_2131 | Conserved hypothetical protein; Contains one Beta-lactamase-like domain (IPR001279). | KaiB homolog. | 0.406 |
MCP_2130 | MCP_0177 | KaiC homolog. | Conserved hypothetical protein. | 0.512 |
MCP_2130 | MCP_2128 | KaiC homolog. | Hypothetical protein. | 0.404 |
MCP_2130 | MCP_2129 | KaiC homolog. | Conserved hypothetical protein; Contains one Beta-lactamase-like domain (IPR001279). | 0.404 |
MCP_2130 | MCP_2131 | KaiC homolog. | KaiB homolog. | 0.933 |
MCP_2130 | MCP_2132 | KaiC homolog. | Putative hybrid sensor and regulator; Contains one PAS domain (IPR000014). | 0.633 |
MCP_2130 | MCP_2133 | KaiC homolog. | KaiB homolog. | 0.730 |
MCP_2131 | MCP_0177 | KaiB homolog. | Conserved hypothetical protein. | 0.442 |
MCP_2131 | MCP_2129 | KaiB homolog. | Conserved hypothetical protein; Contains one Beta-lactamase-like domain (IPR001279). | 0.406 |
MCP_2131 | MCP_2130 | KaiB homolog. | KaiC homolog. | 0.933 |
MCP_2131 | MCP_2132 | KaiB homolog. | Putative hybrid sensor and regulator; Contains one PAS domain (IPR000014). | 0.642 |
MCP_2132 | MCP_2130 | Putative hybrid sensor and regulator; Contains one PAS domain (IPR000014). | KaiC homolog. | 0.633 |
MCP_2132 | MCP_2131 | Putative hybrid sensor and regulator; Contains one PAS domain (IPR000014). | KaiB homolog. | 0.642 |
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