STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_2137Conserved hypothetical protein. (235 aa)    
Predicted Functional Partners:
MCP_2138
Conserved hypothetical protein.
       0.661
dtdA
D-tyrosyl-tRNA(Tyr) deacylase/cell division protein FtsZ homolog; D-aminoacyl-tRNA deacylase with broad substrate specificity. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo; Belongs to the FtsZ family.
  
    0.557
MCP_0848
Conserved hypothetical protein; Belongs to the N-acetylglucosaminylphosphatidylinositol deacetylase family (IPR003737).
  
     0.500
pycA
Putative pyruvate carboxylase subunit A.
  
  
 0.444
MCP_2721
Putative nucleotidyl transferase.
 
  
 0.430
secE
Protein transport protein SEC61 gamma subunit homolog; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
       0.425
spt5
Putative ribosomal protein L26e; Stimulates transcription elongation; Belongs to the archaeal Spt5 family.
       0.422
MCP_0244
Hypothetical protein; Contains one Methyltransferase type 11 domain (IPR013216); Contains two Glycosyl transferase, family 2 domains (IPR001173).
     
 0.412
MCP_0952
Hypothetical protein; Contains one Glycosyl transferase, family 2 domain (IPR001173); Contains one Phosphoglycerate mutase domain (IPR013078).
  
  
 0.404
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.