STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_2159Similar to alpha-aminoadipate aminotransferase LysN in Thermus thermophilus (Q7X567). (402 aa)    
Predicted Functional Partners:
aksF
Putative threo-isocitrate dehydrogenase [NAD].
  
 0.921
dapB
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.
      0.898
MCP_2158
Conserved hypothetical protein.
       0.775
MCP_0526
Conserved hypothetical protein; Contains one Cobyrinic acid a,c-diamide synthase domain (IPR002586); Contains two 4Fe-4S ferredoxin, iron-sulfur binding domains (IPR001450).
   
   0.740
MCP_0527
Conserved hypothetical protein; Contains one Cobyrinic acid a,c-diamide synthase domain (IPR002586); Contains two 4Fe-4S ferredoxin, iron-sulfur binding domains (IPR001450).
   
   0.740
hdrA-1
CoB--CoM heterodisulfide reductase iron-sulfur subunit A; Part of a complex that catalyzes the reversible reduction of CoM-S-S-CoB to the thiol-coenzymes H-S-CoM (coenzyme M) and H-S-CoB (coenzyme B).
   
   0.660
hdrA/mvhD
CoB--CoM heterodisulfide reductase iron-sulfur subunit A; Part of a complex that catalyzes the reversible reduction of CoM-S-S-CoB to the thiol-coenzymes H-S-CoM (coenzyme M) and H-S-CoB (coenzyme B).
   
   0.660
hdrA-2
CoB--CoM heterodisulfide reductase iron-sulfur subunit A; Part of a complex that catalyzes the reversible reduction of CoM-S-S-CoB to the thiol-coenzymes H-S-CoM (coenzyme M) and H-S-CoB (coenzyme B).
   
   0.660
MCP_2157
Hypothetical protein; Contains at least one 4Fe-4S ferredoxin, iron-sulfur binding domain (IPR001450).
       0.639
MCP_0652
Conserved hypothetical protein; Belongs to the NGG1p interacting factor 3, NIF3 family (IPR002678).
 
    0.637
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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