STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_2253Putative signaling protein; Contains one PAS domain (IPR000014); Contains one PAS-associated, C-terminal domain (IPR000700).; Contains PAC motif repeats (IPR001610). (134 aa)    
Predicted Functional Partners:
MCP_2581
Putative response regulator.
  
 
 0.861
pdhC
Pyruvate dehydrogenase E2 component.
   
 0.802
MCP_1444
Putative MCP methyltransferase.
     0.737
MCP_2698
Protein kinase; Contains at least one Tetratricopeptide region domain (IPR013026); Contains at least three Tetratricopeptide TPR_1 repeats (IPR001440).; Contains at least five Tetratricopeptide TPR_2repeats (IPR013105).
   
 0.674
pdhB
Pyruvate dehydrogenase E1 component beta subunit.
   
 0.655
MCP_2023
Putative response regulator.
 
 
 
 0.652
MCP_0475
Putative response regulator.
  
 
 0.651
MCP_2254
Putative histidine kinase; Contains one ATP-binding region, ATPase-like domain (IPR003594).
       0.621
MCP_1156
Putative response regulator.
   
 
 0.597
MCP_1545
Putative response regulator.
   
 
 0.597
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.