Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
MCP_2253Putative signaling protein; Contains one PAS domain (IPR000014); Contains one PAS-associated, C-terminal domain (IPR000700).; Contains PAC motif repeats (IPR001610). (134 aa)    
Predicted Functional Partners:
MCP_2581
Putative response regulator.
  
 
 0.740
MCP_1444
Putative MCP methyltransferase.
     0.737
MCP_2698
Protein kinase; Contains at least one Tetratricopeptide region domain (IPR013026); Contains at least three Tetratricopeptide TPR_1 repeats (IPR001440).; Contains at least five Tetratricopeptide TPR_2repeats (IPR013105).
   
 0.663
MCP_2254
Putative histidine kinase; Contains one ATP-binding region, ATPase-like domain (IPR003594).
       0.618
pdhB
Pyruvate dehydrogenase E1 component beta subunit.
   
 0.615
prs-1
Ribose-phosphate pyrophosphokinase; Belongs to the ribose-phosphate pyrophosphokinase family.
 
 
 0.537
MCP_1677
Putative signaling protein; Contains two PAS domains (IPR000014); Contains one PAS-associated, C-terminal domain (IPR000700).; Contains one PAC motif repeat (IPR001610).
 
     0.527
MCP_0807
Putative signaling protein; Contains three PAS domains (IPR000014); Contains one PAS-associated, C-terminal domain (IPR000700).; Contains one PAC motif repeat (IPR001610).
 
   
 0.501
MCP_2190
Putative signaling protein; Contains seven PAS domains (IPR000014); Contains five PAS-associated, C-terminal domains (IPR000700).; Contains five PAC motif repeats (IPR001610).
 
     0.484
MCP_2755
Hypothetical protein; Contains at least one PBS lyase HEAT-like repeatrepeat (IPR004155).
 
   
 0.471
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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