STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_2262Putative carboxymuconolactone decarboxylase. (124 aa)    
Predicted Functional Partners:
MCP_2263
Conserved hypothetical protein; Belongs to the Protein of unknown function DUF504 family (IPR007547).
       0.603
MCP_1069
Putative carboxymuconolactone decarboxylase; Contains one Alkylhydroperoxidase AhpD core domain (IPR004675).
  
     0.579
sor
Putative superoxide reductase.
  
  
 0.516
aqpM
Aquaporin.
 
    0.461
purB
Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
  
  
 0.444
MCP_2638
4Fe-4S ferredoxin, iron-sulfur binding protein.
 
    0.421
MCP_0070
Peroxiredoxin.
  
  
 0.414
MCP_0461
Peroxiredoxin.
  
  
 0.414
rub
Rubredoxin; Rubredoxin is a small nonheme, iron protein lacking acid- labile sulfide. Its single Fe, chelated to 4 Cys, functions as an electron acceptor and may also stabilize the conformation of the molecule.
  
  
 0.404
MCP_2264
Conserved hypothetical protein.
       0.401
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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