STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_2275Putative phosphoesterase. (241 aa)    
Predicted Functional Partners:
MCP_2274
Similar to Putative ATP-dependent helicase MTH_1802 (O27830), Putative ATP-dependent helicase MJ0294 (Q57742) and Putative ATP-dependent helicase SSO0112 (P95949).
 
    0.938
MCP_2276
Conserved hypothetical protein; Contains one Thioredoxin domain (IPR013766).
 
     0.541
MCP_2273
Hypothetical protein.
       0.528
dnaG
Conserved hypothetical protein; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Also part of the exosome, which is a complex involved in RNA degradation. Acts as a poly(A)-binding protein that enhances the interaction between heteropolymeric, adenine-rich transcripts and the exosome.
 
     0.512
MCP_0129
Putative ATP-dependent helicase.
 
    0.489
MCP_0725
Conserved hypothetical protein; Belongs to the Protein of unknown function DUF655 family (IPR007003).
  
     0.477
MCP_1245
Putative TrmB family transcriptional regulator.
 
     0.423
rpl18e
50S ribosomal protein L18e; Belongs to the eukaryotic ribosomal protein eL18 family.
  
     0.419
MCP_2839
Conserved hypothetical protein; Contains one Elongator protein 3/MiaB/NifBdomain (IPR006638); Contains one Radical SAM domain (IPR007197).
  
     0.417
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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