STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_2275Putative phosphoesterase. (241 aa)    
Predicted Functional Partners:
MCP_2274
Similar to Putative ATP-dependent helicase MTH_1802 (O27830), Putative ATP-dependent helicase MJ0294 (Q57742) and Putative ATP-dependent helicase SSO0112 (P95949).
 
    0.941
MCP_0186
Conserved hypothetical protein.
       0.536
MCP_2276
Conserved hypothetical protein; Contains one Thioredoxin domain (IPR013766).
 
     0.536
MCP_0066
Putative transcriptional regulator.
       0.531
MCP_2273
Hypothetical protein.
       0.528
MCP_0129
Putative ATP-dependent helicase.
 
    0.519
dnaG
Conserved hypothetical protein; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Also part of the exosome, which is a complex involved in RNA degradation. Acts as a poly(A)-binding protein that enhances the interaction between heteropolymeric, adenine-rich transcripts and the exosome.
 
     0.512
MCP_0725
Conserved hypothetical protein; Belongs to the Protein of unknown function DUF655 family (IPR007003).
  
     0.477
MCP_1018
Conserved hypothetical protein.
 
   
 0.431
MCP_1245
Putative TrmB family transcriptional regulator.
 
     0.425
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.