STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_2297Conserved hypothetical protein; Belongs to the Protein of unknown function DUF1621 family (IPR012426). (124 aa)    
Predicted Functional Partners:
MCP_2298
Conserved hypothetical protein; Contains one Zinc finger, ZPR1-type domain (IPR004457).
       0.762
MCP_1538
Conserved hypothetical protein.
  
    0.723
MCP_0020
Conserved hypothetical protein; Belongs to the Protein of unknown function DUF1119, archaea family (IPR010545).
  
     0.695
MCP_0048
Conserved hypothetical protein.
  
     0.695
MCP_0003
Conserved hypothetical protein.
  
     0.691
MCP_2246
Conserved hypothetical protein; Belongs to the Protein of unknown function DUF106, transmembrane family (IPR002809).
 
     0.689
MCP_2705
Putative oligosaccharyl transferase.
  
     0.681
MCP_2999
Putative signal sequence peptidase.
  
     0.677
MCP_0292
Conserved hypothetical protein.
  
     0.675
MCP_1415
Putative small nucleolar RNP Sm protein.
 
     0.672
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.