Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
MCP_1760 | MCP_2349 | MCP_1760 | MCP_2349 | DNA repair helicase. | Putative arylsulfatase. | 0.744 |
MCP_1760 | rpoD | MCP_1760 | MCP_2258 | DNA repair helicase. | DNA-directed RNA polymerase subunit D; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
MCP_1760 | rpoH | MCP_1760 | MCP_1215 | DNA repair helicase. | DNA-directed RNA polymerase subunit H; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoH/eukaryotic RPB5 RNA polymerase subunit family. | 0.999 |
MCP_1760 | rpoK | MCP_1760 | MCP_1643 | DNA repair helicase. | DNA-directed RNA polymerase subunit K; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoK/eukaryotic RPB6 RNA polymerase subunit family. | 0.999 |
MCP_1760 | rpoP | MCP_1760 | MCP_2624 | DNA repair helicase. | DNA-directed RNA polymerase subunit P; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoP/eukaryotic RPC10 RNA polymerase subunit family. | 0.999 |
MCP_1760 | tfb | MCP_1760 | MCP_2617 | DNA repair helicase. | Transcription initiation factor IIB; Stabilizes TBP binding to an archaeal box-A promoter. Also responsible for recruiting RNA polymerase II to the pre-initiation complex (DNA-TBP-TFIIB). | 0.999 |
MCP_1760 | tfe | MCP_1760 | MCP_1509 | DNA repair helicase. | Transcription initiation factor E; Transcription factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Facilitates transcription initiation by enhancing TATA-box recognition by TATA-box-binding protein (Tbp), and transcription factor B (Tfb) and RNA polymerase recruitment. Not absolutely required for transcription in vitro, but particularly important in cases where Tbp or Tfb function is not optimal. It dynamically alters the nucleic acid-binding properties of RNA polymerases by stabilizing the initiation complex and destabilizing elongation comple [...] | 0.999 |
MCP_1840 | MCP_2349 | MCP_1840 | MCP_2349 | Conserved hypothetical protein; Contains one Radical SAM domain (IPR007197). | Putative arylsulfatase. | 0.802 |
MCP_2349 | MCP_1760 | MCP_2349 | MCP_1760 | Putative arylsulfatase. | DNA repair helicase. | 0.744 |
MCP_2349 | MCP_1840 | MCP_2349 | MCP_1840 | Putative arylsulfatase. | Conserved hypothetical protein; Contains one Radical SAM domain (IPR007197). | 0.802 |
MCP_2349 | argF | MCP_2349 | MCP_2049 | Putative arylsulfatase. | Ornithine carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family. | 0.751 |
MCP_2349 | atsB | MCP_2349 | MCP_2346 | Putative arylsulfatase. | Arylsulfatase regulator. | 0.827 |
MCP_2349 | rpoD | MCP_2349 | MCP_2258 | Putative arylsulfatase. | DNA-directed RNA polymerase subunit D; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.772 |
MCP_2349 | rpoH | MCP_2349 | MCP_1215 | Putative arylsulfatase. | DNA-directed RNA polymerase subunit H; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoH/eukaryotic RPB5 RNA polymerase subunit family. | 0.753 |
MCP_2349 | rpoK | MCP_2349 | MCP_1643 | Putative arylsulfatase. | DNA-directed RNA polymerase subunit K; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoK/eukaryotic RPB6 RNA polymerase subunit family. | 0.754 |
MCP_2349 | rpoP | MCP_2349 | MCP_2624 | Putative arylsulfatase. | DNA-directed RNA polymerase subunit P; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoP/eukaryotic RPC10 RNA polymerase subunit family. | 0.744 |
MCP_2349 | tfb | MCP_2349 | MCP_2617 | Putative arylsulfatase. | Transcription initiation factor IIB; Stabilizes TBP binding to an archaeal box-A promoter. Also responsible for recruiting RNA polymerase II to the pre-initiation complex (DNA-TBP-TFIIB). | 0.746 |
MCP_2349 | tfe | MCP_2349 | MCP_1509 | Putative arylsulfatase. | Transcription initiation factor E; Transcription factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Facilitates transcription initiation by enhancing TATA-box recognition by TATA-box-binding protein (Tbp), and transcription factor B (Tfb) and RNA polymerase recruitment. Not absolutely required for transcription in vitro, but particularly important in cases where Tbp or Tfb function is not optimal. It dynamically alters the nucleic acid-binding properties of RNA polymerases by stabilizing the initiation complex and destabilizing elongation comple [...] | 0.743 |
argF | MCP_2349 | MCP_2049 | MCP_2349 | Ornithine carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family. | Putative arylsulfatase. | 0.751 |
atsB | MCP_2349 | MCP_2346 | MCP_2349 | Arylsulfatase regulator. | Putative arylsulfatase. | 0.827 |
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