STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_2371Putative cyclase. (203 aa)    
Predicted Functional Partners:
pycA
Putative pyruvate carboxylase subunit A.
    
  0.810
MCP_0509
Similar to L(+)-tartrate dehydratase subunit alpha TtdB in Escherichia coli. (P05847).
    
  0.804
MCP_0508
Similar to L(+)-tartrate dehydratase subunit beta TtdB in Escherichia coli. (P0AC35).
    
  0.802
pycB
Pyruvate carboxylase subunit B.
    
  0.801
MCP_2372
Putative carbohydrate kinase; Belongs to the carbohydrate kinase PfkB family.
       0.776
MCP_0231
Conserved hypothetical protein; Belongs to the Protein of unknown function DUF849, prokaryotic family (IPR008567).
  
    0.755
MCP_2373
Conserved hypothetical protein.
       0.539
MCP_2374
Hypothetical protein.
       0.404
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.