Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
MCP_2383Putative amylo-alpha-1,6-glucosidase. (563 aa)    
Predicted Functional Partners:
MCP_2380
Putative glycoside hydrolase.
 
  
 0.969
MCP_2381
Putative glycosyltransferase.
 
 
 0.907
MCP_2382
Putative glycosyltransferase.
 
 
 0.890
MCP_0007
Glucan 1,4-alpha-glucosidase.
 
   
 0.734
MCP_2695
Putative glycosyltransferase.
 
 
 0.617
MCP_0652
Conserved hypothetical protein; Belongs to the NGG1p interacting factor 3, NIF3 family (IPR002678).
   
   0.589
MCP_2384
Hypothetical protein; Contains one TrkA-Ndomain (IPR003148); Contains one Ryanodine receptor Ryr domain (IPR003032).
       0.588
MCP_0172
Putative glycosyltransferase.
 
 
 0.581
MCP_0236
Conserved hypothetical protein.
 
 
 0.420
MCP_0235
Conserved hypothetical protein.
 
 
 0.417
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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