STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_2384Hypothetical protein; Contains one TrkA-Ndomain (IPR003148); Contains one Ryanodine receptor Ryr domain (IPR003032). (590 aa)    
Predicted Functional Partners:
MCP_2381
Putative glycosyltransferase.
       0.592
MCP_2382
Putative glycosyltransferase.
       0.592
MCP_2380
Putative glycoside hydrolase.
       0.588
MCP_2383
Putative amylo-alpha-1,6-glucosidase.
       0.588
MCP_0268
Conserved hypothetical protein; Belongs to the Protein of unknown function DUF192 family (IPR003795).
  
     0.443
MCP_1208
Hypothetical protein; Contains at least one WD-40 repeat (IPR001680).
 
     0.415
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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