Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
MCP_2388Conserved hypothetical protein; Contains one Radical SAM domain (IPR007197). (398 aa)    
Predicted Functional Partners:
MCP_0739
Conserved hypothetical protein; Contains one Radical SAM domain (IPR007197).
 
   
0.654
MCP_0689
Putative methyltransferase.
 
      0.637
MCP_0927
Putative cell surface protein; Contains seven 40-residue YVTN beta-propeller repeats (IPR011964).
 
  
 0.499
MCP_0558
Conserved hypothetical protein; Contains one 40-residue YVTN beta-propeller repeat (IPR011964).
 
  
 0.458
MCP_2387
Hypothetical protein.
       0.441
MCP_1164
Conserved hypothetical protein; Contains one Radical SAM domain (IPR007197).
  
     0.440
MCP_0027
Conserved hypothetical protein; Contains one Cobalamin vitamin B12-binding domain (IPR006158); Contains one Elongator protein 3/MiaB/NifB domain (IPR006638).; Contains one Radical SAM domain (IPR007197).
 
  
 0.400
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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