STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_2389Putative C1A family peptidase. (291 aa)    
Predicted Functional Partners:
MCP_0187
Peptidyl-prolyl cis-trans isomerase.
   
 
 0.826
MCP_2265
Conserved hypothetical protein; Belongs to the YbhB and YbcL family (IPR005247).
   
 
 0.796
MCP_2732
Conserved hypothetical protein; Belongs to the YbhB and YbcL family (IPR005247); Contains one PEBP domain (IPR008914).
   
 
 0.796
MCP_0259
GTP-binding protein.
    
   0.781
rps11p
30S ribosomal protein S11P; Located on the platform of the 30S subunit. Belongs to the universal ribosomal protein uS11 family.
   
 0.656
MCP_0901
Conserved hypothetical protein; Contains one Alpha/beta hydrolase fold-1 domain (IPR000073).
 
  
 0.615
MCP_2390
Hypothetical protein.
       0.563
MCP_2698
Protein kinase; Contains at least one Tetratricopeptide region domain (IPR013026); Contains at least three Tetratricopeptide TPR_1 repeats (IPR001440).; Contains at least five Tetratricopeptide TPR_2repeats (IPR013105).
   
 0.547
MCP_0825
Conserved hypothetical protein; Contains one Tetratricopeptide TPR_2 repeat (IPR013105).
   
 0.528
MCP_0300
GTP-binding protein.
   
 0.527
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.