STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_2397Conserved hypothetical protein. (161 aa)    
Predicted Functional Partners:
MCP_2398
Putative glutaredoxin.
 
  
 0.945
MCP_0976
Putative glutaredoxin.
 
  
 0.753
MCP_2396
Putative phosphoesterase.
       0.623
psmB
Proteasome subunit beta; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation.
       0.526
MCP_0410
Putative ABC transporter; Belongs to the SufBD family (IPR000825).
 
   
 0.478
MCP_2400
Conserved hypothetical protein; Contains one KH, type 1 domain (IPR004088); Contains one Beta-lactamase-like domain (IPR001279).; Contains one RNA-metabolising metallo-beta-lactamase domain (IPR011108).
       0.446
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.