Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
fdhB-2Formate dehydrogenase beta chain. (370 aa)    
Predicted Functional Partners:
fdhA-2
Formate dehydrogenase alpha chain.
  
 0.992
fdhA-1
Formate dehydrogenase alpha chain.
 
 0.973
fdhC
Putative formate transporter.
  
  
 0.924
fdhB-1
Formate dehydrogenase beta chain.
  
  
0.907
fwdD-1
Tungsten-containing formylmethanofuran dehydrogenase subunit D.
  
 
 0.906
hdrA-1
CoB--CoM heterodisulfide reductase iron-sulfur subunit A; Part of a complex that catalyzes the reversible reduction of CoM-S-S-CoB to the thiol-coenzymes H-S-CoM (coenzyme M) and H-S-CoB (coenzyme B).
 
 
 0.903
hdrA-2
CoB--CoM heterodisulfide reductase iron-sulfur subunit A; Part of a complex that catalyzes the reversible reduction of CoM-S-S-CoB to the thiol-coenzymes H-S-CoM (coenzyme M) and H-S-CoB (coenzyme B).
 
 
 0.902
fwdG-2
Tungsten-containing formylmethanofuran dehydrogenase subunit G.
  
 
  0.894
mvhD-1
F420-non-reducing hydrogenase iron-sulfur subunit D.
 
 
 0.891
fwdB-1
Tungsten-containing formylmethanofuran dehydrogenase subunit B.
  
 0.888
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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