STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_2418Putative DNA glycosidase. (303 aa)    
Predicted Functional Partners:
MCP_2417
Conserved hypothetical protein; Belongs to the Protein of unknown function DUF1130 family (IPR010556).
     0.973
MCP_1129
Exodeoxyribonuclease.
  
 0.884
MCP_2214
Conserved hypothetical protein; Contains one Endonuclease/exonuclease/phosphatase domain (IPR005135).
  
 0.884
MCP_1091
Putative endonuclease IV.
   
 
 0.753
MCP_0146
Putative ATP-dependent helicase.
    
   0.711
radB
DNA repair and recombination protein RadB; Involved in DNA repair and in homologous recombination. May regulate the cleavage reactions of the branch-structured DNA. Has a very weak ATPase activity that is not stimulated by DNA. Binds DNA but does not promote DNA strands exchange.
   
 
 0.602
radA
DNA repair and recombination protein RadA; Involved in DNA repair and in homologous recombination. Binds and assemble on single-stranded DNA to form a nucleoprotein filament. Hydrolyzes ATP in a ssDNA-dependent manner and promotes DNA strand exchange between homologous DNA molecules.
   
 
 0.602
MCP_1045
Putative family B DNA polymerase.
   
 
 0.595
pol
Family B DNA polymerase.
   
 
 0.595
MCP_1434
Putative family B DNA polymerase.
   
 
 0.595
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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